IEAP - Institute of Experimental and Applied Physics CTU - Czech Technical University in Prague
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IEAP - Institute of Experimental and Applied Physics CTU - Czech Technical University in Prague
CTU - Czech Technical University in Prague
Partial tasks  > Biological Imaging with X-rays
Biological Imaging with X-rays

Biological Imaging with X-rays and Medipix detectors. The single quantum counting pixel device Medipix2 serves as imaging area. Detectors Medipix2 do not suffer from so called dark current (noise) and work in non-limited dynamic range. These features of detectors confer high quality and high contrast of final images.The radiographic imaging with detectors Medipix2 represents non-invasive and non-destructive method of investigation.



Responsible person

Co-workers

Grants:
Number Name Agency
LC06041 Research center "Fabrication, modification and characterization of materials by energetic radiation" MŠMT
MSM 6840770040 Research Program 40: Usage of radionuclides and ionizing radiation. MŠMT


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Ocenění Name Author OceněníScientific journal Year
XUV radiation from gaseous nitrogen and argon target laser plasmas Vrba P.; Vrbová M.; Brůža P.; Pánek D.; Krejčí F.; Kroupa M.; Jakůbek J. Journal of Physics: Conference Series 2011
New approach in phase contrast X-ray imaging using coded aperture Krejčí F.; Jakůbek J.; Kroupa M. 11th ICATPP Conference, Villa Olmo - Como (Italy), 5-9 October 2009, ISBN 10 981-4307-51-2, pp. 59 – 63 2010
Detection of Soft X-rays with the Pixel Detector Timepix operated as a highly sensitive Dark-Current free CCD-like Camera Krejčí F.; Kroupa M.; Jakůbek J.; Brůža P.; Pánek D. 2011 IEEE Nuclear Science Symposium Conference Record, NP5.S-166, 1708 - 1712 2012
Direct thickness calibration: way to radiographic study of soft tissues Vavřík D.; Holý T.; Jakůbek J.; Pospíšil S.; Vykydal Z.; Dammer J. 9th ICATPP 2005 Conf. Proc., Pages: 773-778, doi: 10.1142/9789812773678_0122 2006
Radiography of Chaotically Moving Objects Vavřík D.; Dammer J.; Holý T.; Jakůbek J.; Jakůbek M.; Jandejsek I. AIP Vol. 958 (2007) 139-142 2007
In-vivo real-time X-ray µ-imaging Dammer J.; Holý T.; Jakůbek J.; Jakůbek M.; Pospíšil S.; Vavřík D. AIP Vol. 958 (2007), pp 139 2007
Microradiography with Semiconductor Pixel Detectors Jakůbek J.; Cejnarová A.; Dammer J.; Holý T.; Platkevič M.; Pospíšil S.; Vavřík D.; Vykydal Z. Amer. Inst. of Physics (AIP) Conf. Proc., Volume: 958, Pages: 131-135, doi: 10.1063/1.2825764 2007
Real-Time X-Ray 2-D and 3-D Micro-Imaging of Living Animals with Medipix2 Single Photon Counting Detector Frallicciardi P.; Dammer J.; Weyda F.; Jakůbek J.; Vavřík D.; Pospíšil S. Conf. Proc. IEEE NSS/MIC 2008, M10-112 2008
Invited contribution High Resolution Soft Tissue Tomographic Imaging using Single X-ray Photon Counting Pixel Device Medipix2 Jakůbek J.; Dammer J.; Holý T.; Pospíšil S.; Uher J. Conf.: New Technics in Lab Animal Science 2006
Invited contribution. Energy sensitive micro-radiography and micro-tomography of biological samples allowing tissue type recognition with semiconductor pixel detectors of Medipix family Jakůbek J. EPSM ABEC 2008, Conference handbook, ISBN 0 8582 5872 2, (p. 265) 2008
Real-time in-vivo imaging of small organisms Dammer J.; Jakůbek J.; Hanus R.; Weyda F.; Vavřík D. ICATPP congf. proceedings, p. 640-644 2008
Dental Implant Imaging with Pixel Detectors Granja C.; Jakůbek J.; Linhart V.; Cevallos M.; Krug J. IEEE NSS Conference Record (2004) 3872-3876 2004
Compact system for high resolution X-ray transmission radiography, in-line phase enhanced imaging and micro CT of biological samples Jakůbek J.; Dammer J.; Granja C.; Holý T.; Pospíšil S.; Uher J. IEEE NSS IEEE NSS Conf. Proc. 4179187 (2007) 1077-1080 2007
Low dose X-ray phase contrast imaging sensitive to phase effects in 2-D Krejčí F.; Jakůbek J.; Kroupa M. IEEE NSS/MIC/RTSD Knoxville Conf. Record M09-166, doi: 10.1109/NSSMIC.2010.5874172 2010
Non-destructive observation of damage processes by X-ray dynamic defectoscopy Vavřík D.; Jakůbek J.; Pospíšil S.; Visschers J. International Conference on the Mechanical Behaviour of Materials, Conf. Proc. 2003
Award for the first best poster Microradiography of biological samples with Timepix Dammer J.; Weyda F.; Benes J.; Sopko V.; Jakůbek J.; Vondracek V. JINST 6 C11005 doi:10.1088/1748-0221/6/11/C11005 2011
X-ray color imaging with 3D sensitive voxel detector Soukup P.; Jakůbek J.; Jandejsek I.; Žemlička J. JINST 6 C12014 doi:10.1088/1748-0221/6/12/C12014 2011
Evaluation of sample holders designed for long-lasting X-ray micro-tomographic scans of ex-vivo soft tissue samples Dudák J.; Žemlička J.; Krejčí F.; Karch J.; Patzelt M.; Zach P.; Sykora V.; Journal of Instrumentation 2016
Single grating method for low dose 1-D and 2-D phase contrast X-ray imaging Krejčí F.; Jakůbek J.; Kroupa M. Journal of Instrumentation 6 C01073 2011
Displacement tracking in single human trabecula with metal-plated micro-spheres using X-ray radiography imaging Jiroušek O.; Kytýř D.; Doktor T.; Krejčí F. Journal of Instrumentation 8 C02041 2013
Small-scale in vivo imaging of soft tissues by radioscopy using single X-ray photon counting Hanus R.; Dammer J.; Holý T.; Jakůbek J.; Pospíšil S.; Tykva R. Journal of Microscopy 226 (2007) 191–194 2007
Processes in biological microimaging (Supervisor: J. Jakubek) in progress Skrabal P. Master Thesis, Charles U. Prague 2008
Invited contribution.
Awarded by rector of CTU in Prague (2008). Data processing and image reconstruction methods for pixel detectors Jakůbek J. NIM A 576 (2007) 223-234, doi:10.1016/j.nima.2007.01.157 2007
Real-time in-vivo µ-imaging with Medipix2 Dammer J.; Frallicciardi P.; Jakůbek J.; Jakůbek M.; Pospíšil S.; Prenerová E.; Vavřík D.; Volter L.; Weyda F.; Zemek R. NIM A, Vol. 607, Issue 1, p. 205-207 2009
Phase contrast enhanced high resolution X-ray imaging and tomography of soft tissue Jakůbek J.; Granja C.; Dammer J.; Tykva R.; Hanus R.; Uher J.; Vykydal Z. Nucl. Instr. and Meth. A, Volume: 571, Issue: 1-2, Pages: 69-72, doi: 10.1016/j.nima.2006.10.031 2007
Pixel Detectors for Imaging with Heavy Charged Particles Jakůbek J.; Cejnarová A.; Holý T.; Pospíšil S.; Uher J.; Vykydal Z. Nucl. Instr. and Meth. A, Volume: 591, Issue:1, Pages: 155-158, doi: 10.1016/j.nima.2008.03.091 2008
Invited lecture Microadiographic Measurement of Moving Material Structures Vavřík D.; Holý T.; Jakůbek J.; Jakůbek M. Proceedings of International Symposium on Technology for Next Generation Vehicle & Machine (2007) 2007
Hard x-ray phase contrast imaging using single absorption grating and hybrid semiconductor pixel detector Krejčí F.; Jakůbek J.; Kroupa M. Rev. Sci. Instrum. 81, 113702 2010
2012 International Science & Engineering Visualization Challenge - Honorable Mention X-ray micro-radiography and microscopy of seeds Sýkora V.; Žemlička J.; Krejčí F.; Jakůbek J. Science 339 (6119), 511 2013
Normalized model system for the study of termite management Tykva R.; Hanus R.; Jakůbek J.; Wimmer Z.; Vlasáková V. XVIII World Congress IMEKO 2006
Digital radiography with pixel detectors of Medipix family Jakůbek J.; Dammer J.; Holý T.; Platkevič M.; Uher J.; Vykydal Z. Československý Časopis pro Fyziku, 1/2008, 25-36 2008
Microradiography of biological samples Dammer J.; Jakůbek J.; Vavřík D. Československý Časopis pro Fyziku, 1/2008, 50-52 2008
Microradiography of biologic objects using pixel detectors Dammer J.; Weyda F. Živa 6/2008, p 286-288 2008
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