IEAP - Institute of Experimental and Applied Physics

Staff > Jakůbek Jan, Ing. Ph.D.

Jakůbek Jan, Ing. Ph.D.

Department:	Department of applied physics and technology
Position:	Leader
Phone number:	+420 224 359 181
E-mail:	jan.jakubek@utef.cvut.cz
Collaboration:	regular staff

Personal data

Born:

October 22, 1969, Nový Jičín, Czech Republic.

Education:

1993	Graduated in Mathematical Engineering at Faculty of Nuclear Science and Physical Engineering (FNSPE) of the Czech Technical University in Prague (CTU)
2001	PhD degree in Nuclear Physics at FNSPE CTU

Former positions:

1997-2000	Faculty of nuclear science and physical engineering, CTU, teacher.
2001-2001	Neovision ltd., development of optical measurement methods.
2001-2002	miniRAD ltd., development of a software and hardware for small DAQ systems.
2002- now	Institute of Experimental and Applied Physics CTU, senior researcher, head of department of applied physics and technology.

Main research activities and interests:

Nuclear imaging (Medipix),
Study of semiconductor detection structures and their practical applications,
Spectroscopy, multiparametric coincidence spectroscopy,
Mathematical analysis of data taken from physical experiments,
Instrumentation for nuclear experiments.

Responsible for Grants (12)

TE01020455	Centre for Advanced Nuclear Technologies (CANUT)	GAČR	1.3.2012-31.12.2019
DF12P01OVV048	New portable instruments, laboratory and methodology for the non-destructive materials analysis of the fine art in the frame of cultural heritage protection	MK	1.3.2012-31.12.2015
TA01010164	Advanced Techniques for Detection of Ionizing Radiation	TAČR	1.1.2011-31.12.2014
P105/11/1551	Energetic and stress state aspects of quasi-brittle fracture – consequences for determination of fracture-mechanical parameters of silicate composites	GAČR	1.1.2011-31.12.2013
TA01010237	Facility for nondestructive testing, diagnostics and 3D imaging based on neutron radiography and tomography	TAČR	1.1.2011-31.12.2015
OHK4-002/10	Design of 3D detector of ionizing radiation - voxel detector	IGS ČVUT	1.1.2010-31.12.2011
PN1 3-01-546	Characterization of Pixel DetectorTimePix for Spectroscopy of Fission Fragments and their Decay Radiation	ILL Grenoble	1.1.2009-31.12.2009
103/09/2101	Evaluation of the energy responsible for fracture advancing	GAČR	1.1.2009-31.12.2012
PF2 UCN 3-14-239	Test of Medipix Detector with UCN converter coating	ILL Grenoble	1.1.2008-31.12.2008
MSM 6840770040	Research Program 40: Usage of radionuclides and ionizing radiation.	MŠMT	1.1.2007-31.12.2012
LC06041	Research center "Fabrication, modification and characterization of materials by energetic radiation"	MŠMT	1.4.2006-30.12.2011
106/04/0567	Study of damage zone in high ductile materials in vicinity of crack tip by X-Ray Dynamic Defectoscopy method	GAČR	1.1.2005-1.1.2007

Articles in Impacted Journals
(123)

Articles in Conference Proceedings
(104)

Thesis
(0)

Other publications
(13)

All
(241)

Table format

D. Vavřík, J. Jakůbek, I. Jandejsek, F. Krejčí, I. Kumpová, J. Žemlička, "Visualization of delamination in composite materials utilizing advanced X-ray imaging techniques", Journal of Instrumentation 10 C04012 (2015)

J. Dudák, J. Žemlička, F. Krejčí, �. Polanský, J. Jakůbek, J. Mrzílková, M. Patzelt, J. Trnka, "X-ray micro-CT scanner for small animal imaging based on Timepix detector technology", Nucl. Instr. Methods A 773, 81-86 (2015)

M. Kroupa, S. Hoang, N. Stoffle, P. Soukup, J. Jakůbek, L. Pinsky, "Energy resolution and power consumption of Timepix detector for different detector settings and saturation of front-end electronics", JINST (2014)

J. Žemlička, M. Holík, V. Kraus, J. Jakůbek, "Fast Spectroscopic Imaging with Pixel Semiconductor Detector Timepix and Parallel Data Reading", Journal of Instrumentation (2014)

F. Krejčí, M. Slavíková, J. Žemlička, J. Jakůbek, P. Kotlík, "High-contrast X-ray Radiography Using Hybrid Semiconductor Pixel Detectors with 1 mm thick Si sensor as a Tool for Monitoring Liquids in Natural Building", Journal of Instrumentation 9 C07014 (2014)

J. Jakůbek, M. Jakůbek, M. Platkevič, P. Soukup, D. Tureček, V. Sýkora, D. Vavřík, "Large area pixel detector WIDEPIX with full area sensitivity composed of 100 Timepix assemblies with edgeless sensors", JINST 9 C04018 (2014)

D. Vavřík, M. Holík, J. Jakůbek, M. Jakůbek, V. Kraus, F. Krejčí, P. Soukup, D. Tureček, J. Vacík, J. Žemlička, "Modular pixelated detector system with the spectroscopic capability and fast parallel read-out ", Journal of Instrumentation 9 C06006 (2014)

M. Slavíková, F. Krejčí, P. Kotlík, J. Jakůbek, I. Tomandl, J. Vacík, "Neutron and high-contrast X-ray micro-radiography as complementary tools for monitoring organosilicon consolidants in natural building stones", Nucl. Instr. Methods B: Beam Interactions with Materials and Atoms 338, 42-47 (2014)

X. Wu, J. Kalliopuska, M. Jakůbek, J. Jakůbek, A. Gäddä, S. Eränen, "Study of Edgeless Radiation Detector with 3D Spatial Mapping Technique", JINST 9 C04004 (2014)

I. Jandejsek, J. Jakůbek, M. Jakůbek, P. Průcha, F. Krejčí, P. Soukup, D. Tureček, D. Vavřík, J. Žemlička, "X-ray inspection of composite materials for aircraft structures using detectors of Medipix type", Journal of Instrumentation 9 C05062 (2014)

M. Jakůbek, J. Jakůbek, J. Žemlička, M. Platkevič, V. Havránek, V. Semian, "3D imaging of radiation damage in silicon sensor and spatial mapping of charge collection efficiency", JINST 8 C03023 (2013)

M. Safavi-Naeini, Z. Han, D. Cutajar, S. Guatelli, M. Petasecca, M. Lerch, D. Franklin, J. Jakůbek, S. Pospíšil, J. Bucci, M. Zaider, A. Rosenfeld, "BrachyView, A novel inbody imaging system for HDR prostate brachytherapy: Design and Monte Carlo feasibility study", MEDICAL PHYSICS, Volume 40, Issue 7, Article Number: 071715 DOI: 10.1118/1.4808360 (2013)

M. Petasecca, K. Loo, M. Safavi-Naeini, Z. Han, P. Metcalfe, S. Meikle, S. Pospíšil, J. Jakůbek, J. Bucci, M. Zaider, M. Lerch, Y. Qi, A. Rosenfeld, "BrachyView: Proof-of-principle of a novel in-body gamma camera for low dose-rate prostate brachytherapy", MEDICAL PHYSICS, Volume: 40, Issue: 4, Article Number: 041709, DOI: 10.1118/1.4794487 (2013)

P. Mašek, J. Jakůbek, J. Uher, R. Preston, "Directional Detection of Fast Neutrons by the Timepix Pixel Detector Coupled to Plastic Scintillator with Silicon Photomultiplier Array", JINST 8 C01021 (2013)

C. Granja, P. Krist, D. Chvatil, J. Šolc, S. Pospíšil, J. Jakůbek, L. Opalka, "Energy loss and online directional track visualization of fast electrons with the pixel detector Timepix", Rad. Measurements 59 (2013) 245-261

M. Platkevič, J. Jakůbek, V. Havránek, M. Jakůbek, V. Semian, J. Žemlička, "Evaluation of local radiation damage in silicon sensor via charge collection mapping with the Timepix read-out chip", JINST 8 C04001 (2013)

L. Opalka, C. Granja, J. Jakůbek, S. Pospíšil, J. Šolc, B. Hartmann, M. Martisikova, O. Jaekel, "Linear energy transfer and track pattern recognition of secondary radiation generated in hadron therapy beam in a PMMA target", J.of Instrumentation JINST 8 (2013) C02047

F. Mamedov, P. Čermák, J. Jakůbek, K. Smolek, I. Štekl, J. Vlášek, "Measurement of radon activity in air using electrostatic collection to the Timepix detector", JINST, Volume: 8, Article Number: C03011, DOI: 10.1088/1748-0221/8/03/C03011 (2013)

J. Zajíček, J. Jakůbek, M. Burian, M. Vobecký, A. Fauler, M. Fiederle, A. Zwerger, "Multimodal imaging with hybrid semiconductor detectors Timepix for an experimental MRI-SPECT system", Journal of Instrumentation (2013)

K. Gwosch, B. Hartmann, J. Jakůbek, C. Granja, P. Soukup, M. Martisikova, O. Jaekel, "Non-invasive monitoring of therapeutic carbon ion beams in a homogeneous phantom by tracking of secondary ions ", Physics in Medicine and Biology, Vol. 58, p3755, doi:10.1088/0031-9155/58/11/3755 (2013)

J. Kalliopuska, X. Wu, J. Jakůbek, . Eränen, T. Virolainen, "Processing and characterization of edgeless radiation detectors for large area detection", Nuclear Instruments and Methods in Physics Research A, Volume 731, p. 205-209 (2013)

M. Zboril, S. Bauer, M. Beck, J. Bonn, O. Dragoun, J. Jakůbek, K. Johnston, A. Kovalik, E. Otten, K. Schlosser, M. Slezak, A. Spalek, T. Thummler, D. Venos, J. Žemlička, C. Weinheimer, "Ultra-stable implanted Rb-83/Kr-83m electron sources for the energy scale monitoring in the KATRIN experiment", JINST, Volume: 8 Article Number: P03009 DOI: 10.1088/1748-0221/8/03/P03009 (2013)

V. Sýkora, J. Žemlička, F. Krejčí, J. Jakůbek, "X-ray micro-radiography and microscopy of seeds", Science 339 (6119), 511 (2013)

L. Opalka, C. Granja, B. Hartmann, J. Jakůbek, O. Jaekel, M. Martisikova, S. Pospíšil, J. Solc, "3D measurement of the radiation distribution in a water phantom in a hadron therapy beam", J.of Instrumentation 7 (2012) C01085

N. Stoffle, L. Pinsky, S. Hoang, J. Idarraga, M. Kroupa, J. Jakůbek, D. Tureček, S. Pospíšil, "Initial results on charge and velocity discrimination for heavy ions using silicon-Timepix detectors", Journal of Instrumentation (2012)

J. Žemlička, J. Jakůbek, F. Krejčí, D. Hradil, J. Hradilová, H. Mislerová, "Mobile system for in-situ imaging of cultural objects", Journal of Instrumentation 7 C01108 (2012)

F. Krejčí, J. Jakůbek, M. Kroupa, P. Brůža, D. Pánek, "Pixel detector Timepix operated in pile-up mode for pulsed imaging with ultra-soft X-rays", Journal of Instrumentation 7 C12013 (2012)

M. Jakůbek, J. Jakůbek, J. Žemlička, M. Kroupa, F. Krejčí, "Probe and scanning system for 3D response mapping of pixelated semiconductor detector with X-rays and the timepix device", AIP Conf. Proc. 1423, pp. 461-466; doi:10.1063/1.3688846 (2012)

R. Preston, J. Jakůbek, D. Prokopovich, J. Uher, "Proton beam characterisation of a prototype thin-tile plastic scintillator detector with SiPM readout for use in fast-neutron tracker", JINST 7 P02007 doi:10.1088/1748-0221/7/02/P02007 (2012)

M. Slavíková, F. Krejčí, J. Žemlička, M. Pech, P. Kotlík, J. Jakůbek, "X-ray Radiography and Tomography for Monitoring the Penetration Depth of Consolidants in Opuka - the Building stone of Prague Monuments ", Journal of Cultural Heritage 13 (4), 357-364 (2012)

P. Soukup, J. Jakůbek, Z. Vykydal, "3D sensitive voxel detector of ionizing radiation based on Timepix device", Journal of Instrumentation 6 C01060, doi: 10.1088/1748-0221/6/01/C01060 (2011)

J. Jakůbek, "Absorption and Phase X-ray Imaging Using Reflected Beam", NIM A, 633-1, S172-S174, doi:10.1016/j.nima.2010.06.158 (2011)

M. Platkevič, J. Jakůbek, Z. Vykydal, C. Granja, "Analogue signal from common electrode of pixelated detector for triggering and spectroscopy ", Journal of Instrumentation 6 C11023 doi:10.1088/1748-0221/6/11/C11023 (2011)

J. Žemlička, J. Jakůbek, M. Kroupa, D. Hradil, J. Hradilová, H. Mislerová, "Analysis of painted arts by energy sensitive radiographic techniques with the Pixel Detector Timepix", Journal of Instrumentation 6 C01066, doi: 10.1088/1748-0221/6/01/C01066 (2011)

L. Pinsky, N. Stoffle, J. Jakůbek, S. Pospíšil, C. Leroy, A. Gutierrez, H. , N. Yasuda, Y. Uchihori, "Application of the Medipix2 technology to space radiation dosimetry and hadron therapy beam monitoring ", Nucl. Instr. Methods A, Volume 628, Issue 1, Pages 226-229, doi:10.1016/j.nima.2010.06.323 (2011)

P. Čermák, I. Štekl, V. Bočarov, J. Jakůbek, S. Pospíšil, M. Fiederle, A. Fauler, K. Zuber, P. Loaiza, Y. Shitov, J. Madathiparambil Jose, "Background capabilities of pixel detectors for double beta decay measurements", NIM A (2011)

M. Kroupa, J. Jakůbek, F. Krejčí, J. Žemlička, M. Horáček, T. Radlička, I. Vlček, "Coincidence Imaging System with Electron Optics", Nucl. Instr. Methods A 633, Suppl. 1, S270-S273 (2011)

J. Jakůbek, M. Platkevič, C. Granja, U. Koester, S. Pospíšil, "Direct Observation of Decay of Radioactive Nuclei with Spatial and Time Coincidence Technique", Nucl. Instr. Methods A 633 (2011) S203-S205

M. Esposito, J. Jakůbek, G. Mettivier, S. Pospíšil, P. Russo, J. Šolc, "Energy sensitive Timepix silicon detector for electron imaging", NIM A, Vol. 652, Issue 1, 458-461, doi:10.1016/j.nima.2011.01.148

J. Tous, J. Blazek, J. Žemlička, J. Jakůbek, "Evaluation of a YAG:Ce scintillation crystal based CCD X-ray imaging detector with the Medipix2 detector", JINST 6 C11011 doi:10.1088/1748-0221/6/11/C11011 (2011)

V. Kraus, M. Holík, J. Jakůbek, M. Kroupa, P. Soukup, Z. Vykydal, "FITPix – Fast Interface for Timepix Pixel Detectors", Journal of Instrumentation 6 C01079, doi: 10.1088/1748-0221/6/01/C01079 (2011)

M. Kroupa, J. Jakůbek, "High Contrast Laminography Using Iterative Algorithms", JINST 6 C01045, doi: 10.1088/1748-0221/6/01/C01045 (2011)

I. Jandejsek, P. Soukup, J. Jakůbek, "Image processing for X-ray transmission radiography with 3D voxel detector", JINST 6 C12061 doi:10.1088/1748-0221/6/12/C12061 (2011)

M. Holík, V. Kraus, C. Granja, J. Jakůbek, V. Georgiev, M. Hromadka, J. Skala, Z. Kubik, "Influence of electromagnetic interference on the analog part of hybrid Pixel detectors", JINST 6 C12028, doi:10.1088/1748-0221/6/12/C12028 (2011)

J. Urbář, J. Scheirich, J. Jakůbek, "MEDIPIX/TIMEPIX cosmic ray tracking on BEXUS stratospheric balloon flights", Nucl. Instr. Methods A, Vol. 633, Suppl. 1, p. S206-S209, doi:10.1016/j.nima.2010.06.168 (2011)

J. Bouchami, A. Gutierrez, T. Holý, A. Houdayer, J. Jakůbek, C. Lebel, C. Leroy, J. Macana, J. Martin, S. Pospíšil, S. Prak, P. Sabella, C. Teyssier, "Measurement of pattern recognition efficiency of tracks generated by ionizing radiation in a Medipix2 device", Nucl. Instr. Methods A, Vol. 633, Suppl. 1, p. S187-S189, doi:10.1016/j.nima.2010.06.163 (2011)

M. Martisikova, J. Jakůbek, C. Granja, B. Hartmann, L. Opalka, S. Pospíšil, O. Jaekel, "Measurement of secondary radiation during ion beam therapy with the pixel detector Timepix", JINST 6 (2011) C11014

Z. Vykydal, A. Fauler, M. Fiederle, J. Jakůbek, M. Švestková, A. Zwerger, "Medipix2 based CdTe microprobe for dental imaging", Journal of Instrumentation 6 C12002 doi:10.1088/1748-0221/6/12/C12002 (2011)

J. Dammer, F. Weyda, J. Benes, V. Sopko, J. Jakůbek, V. Vondracek, "Microradiography of biological samples with Timepix", JINST 6 C11005 doi:10.1088/1748-0221/6/11/C11005 (2011)

L. Pinsky, A. Empl, A. Gutierrez, J. Jakůbek, H. Kitamura, J. Miller, C. Leroy, N. Stoffle, S. Pospíšil, Y. Uchihori, N. Yasuda, C. Zeitlin, "Penetrating heavy ion charge and velocity discrimination with a TimePix-based Si detector (for space radiation applications)", Nucl. Instr. Methods A, Vol. 633, Suppl. 1, p. S190-S193, doi:10.1016/j.nima.2010.06.164 (2011)

D. Tureček, T. Holý, J. Jakůbek, S. Pospíšil, Z. Vykydal, "Pixelman: a multi-platform data acquisition and processing software package for Medipix2, Timepix and Medipix3 detectors ", Journal of Instrumentation 6 C01046, doi: 10.1088/1748-0221/6/01/C01046 (2011)

J. Jakůbek, "Precise Energy Calibration of Pixel Detector Working in Time-Over-Threshold Mode", Nucl. Instr. Methods A, Volume 633, Supplement 1, May 2011, Pages S262-S266, doi:10.1016/j.nima.2010.06.183

K. Pavlov, D. Paganin, D. Vine, J. Schmalz, Y. Suzuki, K. Uesugi, A. Takeuchi, N. Yagi, A. Kharchenko, G. Blaj, J. Jakůbek, M. Atissimo, J. Clark, "Quantized hard-x-ray phase vortices nucleated by aberrated nanolenses", Physical Review A, Vol.83, Issue 1, 013813,doi: 10.1103/PhysRevA.83.013813 (2011)

D. Vavřík, J. Dammer, J. Jakůbek, I. Jeon, O. Jiroušek, M. Kroupa, P. Zlámal, "Radiography in Engineering Practice", Nucl. Instr. Methods A, Vol. 633, Suppl. 1, p. S152-S155, doi:10.1016/j.nima.2010.06.152 (2011)

C. Granja, J. Jakůbek, U. Koester, M. Platkevič, S. Pospíšil, "Response of the Pixel Detector TimePix to Heavy Ions", Nucl. Instr. Methods A 633 (2011) S198-S202

J. Jakůbek, C. Granja, B. Hartmann, O. Jäkel, M. Martisikova, L. Opalka, S. Pospíšil, "Selective detection of secondary particles and neutrons produced in ion beam therapy with 3D sensitive voxel detector ", JINST 6 C12010, doi:10.1088/1748-0221/6/12/C12010 (2011)

F. Krejčí, J. Jakůbek, M. Kroupa, V. Jurka, K. Hruška, "Semiconductor pixel detector with absorption grid as a tool for charge sharing studies and energy resolution improvement", Journal of Instrumentation 6 C12034 (2011)

F. Krejčí, J. Jakůbek, M. Kroupa, "Single grating method for low dose 1-D and 2-D phase contrast X-ray imaging", Journal of Instrumentation 6 C01073 (2011)

U. Koester, C. Granja, J. Jakůbek, J. Uher, J. Vacík, "Slow-neutron-induced charged-particle emission-channeling-measurements with Medipix detectors", Nucl. Instr. Methods A 633 (2011) S267-S269

D. Tureček, L. Pinsky, J. Jakůbek, Z. Vykydal, N. Stoffle, S. Pospíšil, "Small Dosimeter based on Timepix device for International Space Station", Journal of Instrumentation 6 C12037, doi: 10.1088/1748-0221/6/12/C12037 (2011)

J. Bouchami, A. Gutierrez, A. Houdayer, J. Jakůbek, C. Lebel, C. Leroy, J. Macana, J. Martin, M. Platkevič, S. Pospíšil, C. Teyssier, "Study of the charge sharing in silicon pixel detector by means of heavy ionizing particles interacting with a Medipix2 device", Nucl. Instr. Methods A. Vol. 607, Issue 1, 1 p. 196-198, doi:10.1016/j.nima.2009.03.147 (2011)

V. Tichý, M. Barbera, A. Collura, M. Hromčík, R. Hudec, A. Inneman, J. Jakůbek, J. Maršík, V. Maršíková, L. Pína, S. Varisco, "Tests of Lobster Eye Optics for Small Space X-ray Telescope", Nucl. Instr. Methods A, Vol. 633, Suppl. 1, p. S169-S171, doi:10.1016/j.nima.2010.06.157 (2011)

J. Dammer, F. Weyda, V. Sopko, J. Jakůbek, "The use of contrast agent for imaging biological samples", JINST 6 C01096, doi: 10.1088/1748-0221/6/01/C01096 (2011)

M. Weaver, J. Green, M. Petasecca, M. Lerch, D. Cutajar, D. Franklin, J. Jakůbek, M. Carolan, M. Conway, S. Pospíšil, T. Kron, P. Metcalfe, M. Zaider, A. Rosenfeld, "Three-dimensional dosimetry imaging of I-125 plaque for eye cancer treatment", Nucl. Instr. Methods A, Vol. 633, Suppl. 1, p. S276-S278, doi:10.1016/j.nima.2010.06.187 (2011)

Z. Vykydal, J. Jakůbek, "USB Lite-Miniaturized readout interface for Medipix2 detector", Nucl. Instr. and Meth. A, Volume 633, Supplement 1, Pages: S48-S49, doi: 10.1016/j.nima.2010.06.118 (2011)

J. Uher, G. Harvey, J. Jakůbek, "X-Ray Fluorescence Imaging With the Medipix2 Single-Photon Counting Detector", IEEE Transactions on Nuclear Science, Vol. PP, Issue: 99, doi: 10.1109/TNS.2011.2173352

F. Krejčí, J. Jakůbek, M. Kroupa, "X-ray Phase Contrast Imaging Using Single Absorption Coded Aperture", Nucl. Instr. Methods A 633, Suppl. 1, 181 - 184 (2011)

J. Uher, J. Jakůbek, S. Mayo, A. Stevenson, J. Tickner, "X-ray beam hardening based material recognition in micro-imaging", JINST 6 P08015 doi:10.1088/1748-0221/6/08/P08015 (2011)

P. Soukup, J. Jakůbek, I. Jandejsek, J. Žemlička, "X-ray color imaging with 3D sensitive voxel detector", JINST 6 C12014 doi:10.1088/1748-0221/6/12/C12014 (2011)

F. Krejčí, J. Jakůbek, M. Kroupa, " Hard x-ray phase contrast imaging using single absorption grating and hybrid semiconductor pixel detector", Rev. Sci. Instrum. 81, 113702 (2010)

C. Granja, V. Linhart, M. Platkevič, J. Jakůbek, S. Pospíšil, T. Slavíček, E. Krousky, O. Renner, "Active Detectors for Plasma Soft X–Ray Detection at PALS", Acta Polytechnica CTU in Prague, Vol. 50, No. 2 (2010) 12-21

M. Othman, D. Marinaro, M. Petasecca, S. Guatelli, D. Cutajar, M. Lerch, D. Prokopovich, M. Reinhard, J. Uher, J. Jakůbek, S. Pospíšil, A. Rosenfeld, "From imaging to dosimetry: GEANT4-based study on the application of Medipix to neutron dosimetry ", Radiation Measurements, Vol. 45, Issue 10, p. 1355-1358 (2010)

M. Othman, M. Petasecca, S. Guatelli, J. Uher, D. Marinaro, D. Prokopovich, M. Reinhard, M. Lerch, J. Jakůbek, S. Pospíšil, A. Rosenfeld, "Neutron Dosimeter Development based on Medipix2", IEEE Transactions on Nuclear Science 57 (6): 3456-3462 (2010)

E. Heijne, R. Ballabriga, D. Boltje, M. Campbell, J. Idarraga, J. Jakůbek, C. Leroy, X. Llopart, L. Tlustos, R. Plackett, S. Pospíšil, D. Tureček, J. Vermeulen, J. Visschers, J. Visser, Z. Vykydal, W. Wong, "Vectors and submicron precision: redundancy and 3D stacking in silicon pixel detectors", Journal of Instrumentation 5 C06004, doi: 10.1088/1748-0221/5/06/C06004 (2010)

J. Jakůbek, P. Schmidt-Wellenburg, P. Geltenbort, M. Platkevič, C. Plonka-Spehr, J. Šolc, T. Soldner, "A coated pixel device TimePix with micron spatial resolution for UCN detection", NIM A, Vol. 600, Issue 3, p. 651-656 (2009)

P. Frallicciardi, J. Jakůbek, D. Vavřík, "Comparison of Single Photon Counting and Charge-Integrating Detectors for X-ray High Resolution Imaging of Small Biological Objects", NIM A, Vol. 607, Issue 1, p. 221-222 (2009)

D. Greiffenberg, M. Fiederle, Z. Vykydal, V. Král, J. Jakůbek, T. Holý, S. Pospíšil, D. Maneuski, V. O'Shea, M. Suk, M. Králík, C. Lebel, C. Leroy, "Detection efficiency of ATLAS-MPX detectors with respect to neutrons", Nucl. Instr. and Meth. A, Volume 607, Issue 1, Pages: 38-40, doi: 10.1016/j.nima.2009.03.103

J. Jakůbek, "Energy Sensitive X-ray Radiography and Charge Sharing Effect in Pixelated Detector", NIM A, Vol. 607, Issue 1, p. 192-195 (2009)

J. Žemlička, J. Jakůbek, M. Kroupa, V. Tichy, "Energy and Position Sensitive Pixel Detector Timepix for X-Ray Fluorescence Imaging", NIM A, Vol. 607, Issue 1, p. 202-204 (2009)

F. Krejčí, J. Jakůbek, J. Dammer, D. Vavřík, "Enhancement of spatial resolution of roentgenographic methods", Nucl. Instr. Methods A 607, Issue 1, 208-211 (2009)

J. Jakůbek, M. Platkevič, P. Schmidt-Wellenburg, P. Geltenbort, C. Plonka-Spehr, M. Daum, "Position-sensitive spectroscopy of ultra-cold neutrons with Timepix pixel detector", NIM A, Vol. 607, Issue 1, p. 45-47 (2009)

D. Vavřík, J. Jakůbek, "Radiogram enhancement and linearization using the beam hardening correction method", NIM A, Vol. 607, Issue 1, p. 212-214 (2009)

J. Dammer, P. Frallicciardi, J. Jakůbek, M. Jakůbek, S. Pospíšil, E. Prenerová, D. Vavřík, L. Volter, F. Weyda, R. Zemek, "Real-time in-vivo µ-imaging with Medipix2", NIM A, Vol. 607, Issue 1, p. 205-207 (2009)

J. Jakůbek, "Semiconductor Pixel Detectors and their Applications in Life Sciences", 2009 JINST 4 P03013 doi:10.1088/1748-0221/4/03/P03013

J. Bouchami, A. Gutierrez, A. Houdayer, J. Idarraga, J. Jakůbek, C. Lebel, C. Leroy, J. Martin, M. Platkevič, S. Pospíšil, "Study of the charge sharing in silicon pixel detector with heavy ionizing particles interacting with a Medipix2 device", NIM A, Vol. 607, Issue 1, p. 196-198 (2009)

Z. Vykydal, J. Bouchami, M. Campbell, Z. Doležal, M. Fiederle, D. Greiffenberg, A. Gutierrez, E. Heijne, T. Holý, J. Idarraga, J. Jakůbek, V. Král, M. Králík, C. Lebel, C. Leroy, X. Llopart, D. Maneuski, M. Nessi, V. O/'Shea, M. Platkevič, S. Pospíšil, M. Suk, L. Tlustos, P. Vichoudis, J. Visschers, I. Wilhelm, J. Žemlička, "The Medipix2-Based Network for Measurement of Spectral Characteristics and Composition of Radiation in ATLAS Detector", Nucl. Instr. and Meth. A, Volume 607, Issue 1, Pages: 35-37, doi: 10.1016/j.nima.2009.03.104

T. Michel, J. Durst, J. Jakůbek, "X-ray polarimetry by means od Compton scattering in the sensor of a hybrid photon counting detector", NIMA Vol. 603, Issue 3, p. 384-392 (2009)

J. Uher, J. Jakůbek, L. Celine, L. Claude, S. Pospíšil, R. Škoda, Z. Vykydal, "Detection of fast neutrons with the Medipix-2 pixel detector", Nucl. Instr. and Meth. A, Volume: 591, Issue:1, Pages: 71-74, doi: 10.1016/j.nima.2008.03.027

M. Fiederle, D. Greiffenberg, J. Idarraga, J. Jakůbek, V. Král, C. Lebel, C. Leroy, G. Lord, S. Pospíšil, V. Sochor, M. Suk, "Energy calibration measurements of MediPix2", NIM A, Vol. 591, Issue 1, p. 75-79 (2008)

A. Abdesselam, P. Allport, B. Anderson, P. Beneš, J. Beneš, T. Horažďovský, J. Jakůbek, V. Král, V. Linhart, S. Pospíšil, T. Slavíček, M. Solar, V. Sopko, . et al., "Engineering for the ATLAS SemiConductor Tracker (SCT) end-cap", JINST 3 P05002, doi: 10.1088/1748-0221/3/05/P05002 (2008)

O. Renner, L. Juha, J. Krása, C. Granja, J. Jakůbek, V. Linhart, S. Pospíšil, T. Slavíček, Z. Vykydal, "Low-energy nuclear transitions in subrelativistic laser-generated plasmas", Laser and Particle Beams, Volume: 26, Issue: 2, Pages: 249-257, doi: 10.1017/S0263034608000293 (2008)

R. Tykva, R. Hanus, J. Jakůbek, "Measuring system for the study of termite control by a juvenogen", Measurement, vol 41, issue 9, p. 1054-1057 (2008)

D. Vavřík, J. Jakůbek, T. Holý, "Micrometric scale measurement of material structure moving utilizing μ-radiographic technique", NIM A, Vol. 591, Issue 1, p. 24-27 (2008)

T. Holý, H. Erik, J. Jakůbek, S. Pospíšil, J. Uher, Z. Vykydal, "Pattern recognition of tracks induced by individual quanta of ionizing radiation in Medipix2 silicon detector", Nucl. Instr. and Meth. A, Volume: 591, Issue:1, Pages: 287-290, doi: 10.1016/j.nima.2008.03.074

J. Jakůbek, A. Cejnarová, T. Holý, S. Pospíšil, J. Uher, Z. Vykydal, "Pixel Detectors for Imaging with Heavy Charged Particles", Nucl. Instr. and Meth. A, Volume: 591, Issue:1, Pages: 155-158, doi: 10.1016/j.nima.2008.03.091

M. Platkevič, V. Bočarov, J. Jakůbek, S. Pospíšil, V. Tichy, Z. Vykydal, "Signal processor controlled USB2.0 interface for Medipix2 detector", Nucl. Instr. and Meth. A, Volume: 591, Issue:1, Pages: 245-247, doi: 10.1016/j.nima.2008.03.065

M. Campbell, H. Erik, T. Holý, J. Idarraga, J. Jakůbek, L. Celine, L. Claude, X. Llopart, S. Pospíšil, L. Tlustos, Z. Vykydal, "Study of the charge sharing in silicon pixel detector by means of alpha particles interacting with a Medipix2 device", Nucl. Instr. and Meth. A, Volume: 591, Issue:1, Pages: 38-41, doi: 10.1016/j.nima.2008.03.096

A. Abdesselam, P. Allport, P. Beneš, D. Chren, Z. Doležal, T. Holý, T. Horažďovský, J. Jakůbek, Z. Kohout, V. Král, V. Linhart, S. Pospíšil, T. Slavíček, M. Solar, V. Sopko, B. Sopko, I. Štekl, . et al., "The integration and engineering of the ATLAS SemiConductor Tracker Barrel", JINST 3 P10006 (2008)

V. Tichy, T. Holý, J. Jakůbek, V. Linhart, S. Pospíšil, Z. Vykydal, "X-Ray Fluorescence Imaging with Pixel Detectors", Nucl. Instr. and Meth. A, Volume: 591, Issue:1, Pages: 67-70, doi: 10.1016/j.nima.2008.03.122

J. Uher, J. Jakůbek, Z. Kohout, V. Linhart, S. Pospíšil, C. Fröjd, S. Petersson, C. Kenney, S. Parker, G. Thungstrom, "Characterization of 3D thermal neutron semiconductor detectors", NIM A 576 (2007) 32-37

J. Jakůbek, "Data processing and image reconstruction methods for pixel detectors", NIM A 576 (2007) 223-234, doi:10.1016/j.nima.2007.01.157

I. Ndiaye, M. Vobecký, S. Pospíšil, J. Jakůbek, T. Holý, "Determination of Iridium Content by Coincidence Neutron Activation Analysis", Chem. Listy 101 (2007) 327-333

J. Jakůbek, C. Granja, J. Dammer, R. Tykva, R. Hanus, J. Uher, Z. Vykydal, "Phase contrast enhanced high resolution X-ray imaging and tomography of soft tissue", Nucl. Instr. and Meth. A, Volume: 571, Issue: 1-2, Pages: 69-72, doi: 10.1016/j.nima.2006.10.031 (2007)

C. Granja, J. Jakůbek, S. Pospíšil, Z. Vykydal, Y. Kopatch, S. Telezhnikov, "Position-sensitive spectroscopy of 252Cf fission fragments", Nucl. Instr. and Meth. A, Volume: 574, Issue: 3, Pages: 472-478, doi: 10.1016/j.nima.2007.01.164

R. Hanus, J. Dammer, T. Holý, J. Jakůbek, S. Pospíšil, R. Tykva, "Small-scale in vivo imaging of soft tissues by radioscopy using single X-ray photon counting", Journal of Microscopy 226 (2007) 191–194

J. Jakůbek, G. Mettivier, M. Montesi, S. Pospíšil, P. Russo, "CdTe Hybrid Pixel Detector for Imaging with Thermal Neutrons", NIM A Vol. 563, pages 238-241 (2006)

T. Holý, J. Jakůbek, S. Pospíšil, J. Uher, D. Vavřík, Z. Vykydal, "Data acquisition and processing software package for Medipix-2 device", Nucl. Instr. and Meth. A, Volume: 563, Issue:1, Pages: 254-258, doi: 10.1016/j.nima.2006.01.122

J. Jakůbek, D. Vavřík, T. Holý, M. Jakůbek, Z. Vykydal, "Experimental system for high resolution X-ray transmission radiography", Nucl. Instr. and Meth. A, Volume: 563, Issue 1, Pages: 278-281, doi: 10.1016/j.nima.2006.01.033

J. Jakůbek, T. Holý, E. Lehmann, S. Pospíšil, J. Uher, D. Vavřík, "Neutron Imaging with MEDIPIX2 Chip and a Coated Sensor", NIM A Vol. 560, pages 143-147 (2006)

J. Jakůbek, C. Granja, T. Holý, E. Lehmann, V. Linhart, S. Pospíšil, V. Rypar, J. Uher, J. Vacík, D. Vavřík, Z. Vykydal, M. Cevallos, "Neutron imaging and tomography with Medipix2 and dental microroentgenography", Nucl. Instr. and Meth. A, Volume: 569, Issue 2, Pages: 205-209, doi: 10.1016/j.nima.2006.08.043

C. Granja, J. Jakůbek, V. Linhart, S. Pospíšil, T. Slavíček, J. Uher, Z. Vykydal, O. Renner, . et al., "Search for low-energy nuclear transitions in laser-produced plasma", Czech Journal of Physics, Volume: 56, Supplement: B, Pages: B478-B484, doi: 10.1007/s10582-006-0241-0 (2006)

Z. Vykydal, J. Jakůbek, S. Pospíšil, "USB Interface for Medipix2 Pixel Device Enabling Energy and Position Detection of Heavy Charged Particles", Nucl. Instr. and Meth. A, Volume: 563, Issue: 1, Pages: 112-115, doi: 10.1016/j.nima.2006.01.114

J. Uher, T. Holý, J. Jakůbek, E. Lehmann, S. Pospíšil, J. Vacík, "Performance of Slow Neutron Pixel Detector", NIM A Vol. 542, pages 283-287 (2005)

J. Jakůbek, D. Vavřík, S. Pospíšil, J. Uher, "Quality of X-ray transmission radiography based on single photon counting pixel device", NIM A Vol. 546, pages 113-117 (2005)

J. Jakůbek, T. Holý, S. Pospíšil, J. Uher, D. Vavřík, "Spatial Resolution of the Medipix-2 as Neutron Pixel Detector", NIM A Vol. 546, pages 164-169 (2005)

J. Jakůbek, T. Holý, S. Pospíšil, J. Uher, D. Vavřík, "Properties of the single neutron pixel detector based on the Medipix-1 device", NIM A Vol. 531, pages 276-284 (2004)

J. Jakůbek, T. Holý, S. Pospíšil, D. Vavřík, "Tomography for XRDD", NIM A Vol. 531, pages 307-313 (2004)

M. Šiňor, J. Jakůbek, V. Linhart, B. Mikulec, S. Pospíšil, B. Sopko, "Charge sharing studies with a Medipix1 pixel device", NIM A Vol. 509, pages 346-354 (2003)

J. Jakůbek, S. Pospíšil, D. Vavřík, J. Visschers, "Resolution and stability tests of a Medipix-1 pixel detector for X-ray dynamic defectoscopy", NIM A Vol. 509, pages 294-301 (2003)

I. Ropotár, J. Jakůbek, S. Pospíšil, I. Štekl, . et al., "LHC1 pixel detector studied in a 120 GeV/c pion test beam", NIM A Vol. 493, pages 536-546 (2000)

S. Pospíšil, I. Štekl, P. Čermák, J. Jakůbek, J. Koníček, V. Linhart, . et al., "Experimental Tests of Neutron Shielding for the ATLAS Forward Region", Nucl. Instr. Meth. in Phys. Res. A 420 (1999) 249-258

M. Vobecký, J. Jakůbek, C. Granja, J. Koníček, S. Pospíšil, "Multielement instrumental activation analysis based on gamma-gamma coincidence spectroscopy", Analytica Chimica Acta 396 (1999) 181-189

J. Jakůbek, S. Pospíšil, I. Štekl, M. Vobecký, . et al., "Coincidence gamma-gamma spectroscopy system for instrumental neutron activation analysis", NIM A Vol. 414, pages 261-264 (1998)